| 2024 | Uma Thurman: Hollywood's Silent Warrior | Self (archive) - director | Film |
| 2024 | My National Gallery, London | Self | Film |
| 2020 | Bye Bye Morons | Le chasseur publicité | Film |
| 2019 | He Dreams of Giants | Self | Film |
| 2018 | The Man Who Killed Don Quixote | Giant #2 (Voice) | Film |
| 2018 | The Man Who Killed Don Quixote | Director | Film |
| 2015 | Absolutely Anything | Nasty Alien (voice) | Film |
| 2014 | Monty Python's Best Bits (Mostly) | Self (archive footage) | TV |
| 2013 | The Zero Theorem | Director | Film |
| 2012 | For No Good Reason | Self | Film |
| 2012 | A Liar's Autobiography: The Untrue Story of Monty Python's Graham Chapman | Various (voice) | Film |
| 2012 | Ray Harryhausen: Special Effects Titan | Self | Film |
| 2011 | George Harrison: Living in the Material World | Self | Film |
| 2011 | Adventures in Plymptoons! | Self | Film |
| 2011 | The Monster of Nix | The Ranger (Voice) | Film |
| 2011 | The Wholly Family | Director | Film |
| 2011 | The Wholly Family | Writer | Film |
| 2010 | Not the Messiah (He's a Very Naughty Boy) | Not an Individual / Mexican / Mountie | Film |
| 2010 | Who Is Harry Nilsson (And Why Is Everybody Talkin' About Him?) | Self | Film |
| 2010 | The Legend of Hallowdega | Senior Citizen in Photo (uncredited) | Film |
| 2010 | Arcade Fire: UNSTAGED | Director | Film |
| 2010 | The Legend of Hallowdega | Director | Film |
| 2009 | The Imaginarium of Doctor Parnassus | Director | Film |
| 2009 | The Imaginarium of Doctor Parnassus | Producer | Film |
| 2008 | Mel Blanc: The Man of a Thousand Voices | Himself | Film |
| 2008 | What Is Brazil? | Self | Film |
| 2008 | Monty Python: Before the Flying Circus | Self | Film |
| 2008 | The Madness and Misadventures of Munchausen | Self - Director & Writer | Film |
| 2007 | The Secret Life of Brian | Self | Film |
| 2007 | Forging the Frame: The Roots of Animation, 1900-1920 | Himself | Film |
| 2006 | Monty Python's Flying Circus—Terry Gilliam's Personal Best | Various Characters | Film |
| 2006 | Monty Python's Flying Circus—Terry Jones' Personal Best | Various Characters | Film |
| 2006 | Monty Python's Flying Circus—Eric Idle's Personal Best | Various Characters | Film |
| 2006 | Monty Python's Flying Circus—Graham Chapman's Personal Best | Various Characters | Film |
| 2006 | Monty Python's Flying Circus—Michael Palin's Personal Best | Various Characters | Film |
| 2006 | Locked Out | Le faux bébé | Film |
| 2005 | The Roots of Monty Python | Self (archive footage) | Film |
| 2005 | The Brothers Grimm | Director | Film |
| 2005 | Tideland | Director | Film |
| 2005 | The Piano Tuner of Earthquakes | Executive Producer | Film |
| 2004 | Remember the Secret Policeman's Ball? | Self | Film |
| 2003 | Breakfast with Hunter | Self | Film |
| 2003 | The Meaning of Making 'The Meaning of Life' | Self | Film |
| 2002 | Forever Ealing | Self | Film |
| 2002 | Lost in La Mancha | Self - Writer & Director | Film |
| 1998 | Monty Python: Live at Aspen | Self | Film |
| 1998 | Fear and Loathing in Las Vegas | Director | Film |
| 1996 | The Hamster Factor and Other Tales of 'Twelve Monkeys' | Self | Film |
| 1996 | The Battle of Brazil: A Video History | Self | Film |
| 1995 | Twelve Monkeys | Director | Film |
| 1994 | Philip K Dick: A Day in the Afterlife | Self - Interviewee | Film |
| 1994 | Quentin Tarantino: Hollywood's Boy Wonder | Self | Film |
| 1991 | The Fisher King | Director | Film |
| 1990 | Life of Python | Self / Various Roles | Film |
| 1989 | Parrot Sketch Not Included: Twenty Years of Monty Python | Self / Various Characters | Film |
| 1989 | Parrot Sketch Not Included: Twenty Years of Monty Python | Writer | Film |
| 1985 | Spies Like Us | Dr. Imhaus | Film |
| 1985 | Brazil | Director | Film |
| 1983 | The Crimson Permanent Assurance | Director | Film |
| 1982 | Monty Python Live at the Hollywood Bowl | Various Roles | Film |
| 1982 | Monty Python Live at the Hollywood Bowl | Writer | Film |
| 1981 | Time Bandits | Director | Film |
| 1981 | Time Bandits | Writer | Film |
| 1981 | Time Bandits | Producer | Film |
| 1979 | The Pythons: Somewhere in Tunisia, Circa A.D. 1979 | Self | Film |
| 1979 | Storytime | Narrator | Film |
| 1979 | Life of Brian | Man Even Further Forward / Revolutionary / Jailer / Blood and Thunder Prophet / Frank / Audience Member / Crucifee | Film |
| 1979 | Storytime | Director | Film |
| 1977 | Jabberwocky | Director | Film |
| 1976 | Pleasure at Her Majesty's | Self | Film |
| 1975 | Monty Python and the Holy Grail | Patsy / Green Knight / Old Man from Scene 24 (Bridgekeeper) / Sir Bors / Animator / Gorilla Hand | Film |
| 1975 | Monty Python and the Holy Grail | Director | Film |
| 1975 | Monty Python and the Holy Grail | Writer | Film |
| 1974 | Miracle of Flight | Voice | Film |
| 1974 | Miracle of Flight | Director | Film |
| 1974 | Miracle of Flight | Writer | Film |
| 1974 | Miracle of Flight | Producer | Film |
| 1972 | Monty Python's Fliegender Zirkus | Various Characters | TV |
| 1969 | Monty Python's Flying Circus | Various | TV |